Japan | Yusuke Nakamura RIKEN and University of Tokyo | Japanese Ministry of Education, Culture, Sports, Science and Technology | Genotyping- Third Wave | 24.3 % |
| Ichiro Matsuda Health Sciences University of Hokkaldo with Eubios Ethics Institute and Shinshu University | Japanese Ministry of Education, Culture, Sports, Science and Technology | Public Consultation and Sample Collection | |
United Kingdom | David Bentley Wellcome Trust Sanger Institute | Wellcome Trust | Genotyping- Illumina BeadArray | 23.7% |
| Peter Donnelly University of Oxford | Wellcome Trust, Nuffield Foundation, Wolfson Foundation, The SNP Consortium, National Institutes of Health (NIH) | Analysis | |
| Lon Cardon University of Oxford Wellcome Trust Centre for Human Genetics | Wellcome Trust, The SNP Consortium, NIH | Analysis | |
Canada | Thomas Hudson McGill University and Génome Québec Innovation Centre | Genome Canada, Génome Québec | Genotyping-Illumina BeadArray | 10.1% |
China (The Chinese HapMap Consortium | Huanming Yang Beijing Genomics Institute Changqing Zeng Beijing Genomics Institute Yan Shen Chinese National Human Genome Center at Beijing | Chinese Ministry of Science and Technology, Chinese Academy of Sciences, National Natural Science Foundation of China | Genotyping-Sequenom MassExtend, Illumina BeadArray | 5.9% |
| Wei Huang Chinese National Human Genome Center at Shanghai | Chinese Ministry of Science and Technology, Chinese Academy of Sciences, National Natural Science Foundation of China | Genotyping-Illumina BeadArray | 1.1% |
| Lap-Chee Tsui Hong Kong HapMap Group Paul Kwong-Hang Tam The University of Hong Kong William Wai-Nam Mak The University of Hong Kong Jeffrey Tze-Fei Wong Hong Kong University of Science and Technology Mary Miu Yee Waye The Chinese University of Hong Kong | Hong Kong Innovation and Technology Commission, University Grants Committee of Hong Kong | Genotyping-Sequenom Mass Extend | 2.5% |
| Houcan Zhang Beijing Normal University | Chinese Ministry of Science and Technology | Community Engagement | |
| Changqing Zeng Beijing Genomics Institute | Chinese Ministry of Science and Technology | Sample Collection | |
United States | Mark Chee Illumina | National Institutes of Health (NIH) | Genotyping-Illumina BeadArray | 16.1% |
| David Altshuler Broad Institute of Harvard and MIT | NIH | Genotyping-Sequenom MassExtend, Illumina BeadArray
Analysis | 9.7% |
| Richard GIbbs Baylor College of Medicine with ParAllele BioScience | NIH | Genotyping-ParAllele | 4.6% |
| Pul-Yan Kwok University of California, San Francisco with Washington University in St. Louis | NIH | Genotyping-Perkin Elmer AcycloPrim-FP | 2.0% |
| Aravinda Chakravarti Johns Hopkins School of Medicine | NIH | Analysis | |
| Gonçalo Abecasis University of Michigan | NIH | Analysis | |
| Mark Leppert University of Utah | W.M. Keck Foundation, Delores Dore Eccles Foundation, NIH | Community Engagment and Sample Collection | |
| Kelly Frazer Perlegen Sciences | Wellcome Trust, Genome Canada, Génome Québec, Bristol-Myers Squibb Co., Pfizer Inc., The SNP Consortium, NIH | Genotyping-High Density Oligonucleotide Array | 2.6 million SNPs in Phase II |
Nigeria | Charles Rotimi Howard University with University of Ibadan | NIH | Community Engagement and Sample Collection | |
Data Coordination | Lincoln Stein Cold Spring Harbor Laboratory | The SNP Consortium, NIH | Data Coordination Center | |