Social Media
Participants and Projects
Phase 4 (Current)
Grantees | Institutions | Title | Grant Number |
---|---|---|---|
Mapping Awards | |||
Bradley Bernstein | Broad Institute of Harvard and MIT | A Catalog of Cell Types and Genomic Elements in Tissues, Organoids and Disease | UM1 HG009390 |
Erez Lieberman Aiden | Baylor College of Medicine | Genome-Wide Mapping of Loops Using In Situ Hi-C | UM1 HG009375 |
Mats Ljungman | University of Michigan | Mapping of Novel Candidate Functional Elements with Bru-Seq Technology | UM1 HG009382 |
Richard Myers Eric Mendenhall |
HudsonAlpha Institute for Biotechnology University of Alabama in Huntsville |
An ENCODE ChIP-seq pipeline using endogenously tagged human DNA-associated proteins | UM1 HG009411 |
Charles Lee | The Jackson Laboratory | Comprehensive Mapping of Long-Range Chromatin Interactions in Human and Mouse Genomes | UM1 HG009409 |
Michael Snyder | Stanford University | Production Center for Mapping Regulatory Regions of the Human Genome | UM1 HG009442 |
John Stamatoyannopoulos | Altius Institute for Biomedical Sciences | ENCODE Mapping Center - A Comprehensive Catalog of Dnase I Hypersensitive Sites | UM1 HG009444 |
Barbara Wold Ali Mortazavi |
California Institute of Technology University of California, Irvine |
High Precision Human and Mouse Transcriptomes | UM1 HG009443 |
Functional Characterization Awards | |||
Nadav Ahituv Jay Shendure |
University of California, San Francisco University of Washington |
Massively parallel reporter assays and genome editing of ENCODE predicted regulatory elements | UM1 HG009408 |
William Greenleaf Michael Bassik |
Stanford University | High-throughput systematic characterization of regulatory element function | UM1 HG009436 |
John Lis Haiyuan Yu |
Cornell University | High-throughput functional characterization of human enhancers | UM1 HG009393 |
Len Pennacchio Axel Visel |
Lawrence Berkeley National Laboratory | In Vivo Characterization of Major ENCODE-Predicted Classes of Noncoding Variants | UM1 HG009421 |
Tim Reddy Maria Ciofani Gregory Crawford Charles Gersbach |
Duke University | Regulatory Mechanisms Of CD4+ T Cell Differentiation | UM1 HG009428 |
Pardis Sabeti | Broad Institute | Comprehensive Functional Characterisation And Dissection of Noncoding Regulatory Elements And Human Genetic Variation | UM1 HG009435 |
Yin Shen| Bing Ren |
University of California, San Francisco University of California, San Diego Ludwig Institute for Cancer Research |
High-throughput CRISPR-mediated functional validation of regulatory elements | UM1 HG009402 |
Jennifer Moran | Tempus Health, Inc. | Center For Functional Validation and Evaluation Of ENCODE Enhancer Regions | UM1 HG009426 |
Computational Analysis Awards | |||
Michael Beer | Johns Hopkins University | Systematic Identification of Core Regulatory Circuitry from ENCODE Data | U01 HG009380 |
Christina Leslie | Memorial Sloan Kettering Cancer Center | Encoding genomic architecture in the encyclopedia: linking DNA elements, chromatin state, and gene expression in 3D | U01 HG009395 |
Alkes Price Soumya Raychaudhuri |
Harvard University Brigham and Women's Hopsital |
Functionally specialized components of disease heritability in ENCODE data | U01 HG009379 |
Jonathan Pritchard | Stanford University | Decoding the regulatory architecture of the human genome across cell types, indviduals and disease | U01 HG009431 |
Ting Wang Barak Cohen Cedric Feschotte |
Washington University Cornell University |
Connecting transposable elements and regulatory innovation using ENCODE data | U01 HG009391 |
Xinshu Grace Xiao | University of California, Los Angeles | Analysis of functional genetic variants in RNA processing and expression | U01 HG009417 |
Data Coordination Center | |||
J. Michael Cherry | Stanford University | A Data Coordinating Center for ENCODE | U24 HG009397 |
Data Analysis Center | |||
Zhiping Weng Mark Gerstein |
University of Massachusetts Medical School Yale University |
EDAC: ENCODE Data Analysis Center | U24 HG009446 |
Affiliate Members
Brenton Graveley,
University of Connecticut Health Center
Gene Yeo
University of California, San Diego
Guo-Cheng Yuan
Icahn School of Medicine at Mount Sinai
Alexander Dobin
Cold Spring Harbor Laboratory
Melissa Fullwood
Nanyang Technological University and Cancer Science Institute
Nir Yosef
University of California, Berkeley
Jesse Engreitz
Stanford University
Adam Siepel
Simons Center for Quantitative Biology at Cold Spring Harbor Laboratory
Douglas Phanstiel
University of North Carolina at Chapel Hill
Feng Yue
Northwestern University
Max Libbrecht
Simon Fraser University
Jian Ma
Carnegie Mellon University
Katie Pollard
University of California, San Francisco
Past Participants and Projects
Program Staff
Program Directors
- Program Director
- Division of Genome Sciences
- Program Director
- Division of Genome Sciences
- Program Director
- Division of Genome Sciences
- Scientific Program Manager
- Division of Genome Sciences
Last updated: September 17, 2023