NHGRI logo

Approved Sequencing Targets (Archive)

Project Name Common Name Scientific Name Taxonomy Target Sequencing
Group		 Project Status
Black Yeasts* Black Yeast Cladophialophora bantiana Bacteria Draft Assembly BI Not Started
Black Yeasts* Black Yeast Cladophialophora carrionii Bacteria Draft Assembly BI Not Started
Black Yeasts* Black Yeast Cladophialophora psammophila Bacteria Draft Assembly BI Not Started
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* Cyptococcus (multiple variety) Cyptococcus neoformans var. grubii Bacteria Resequencing BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* Cyptococcus (multiple variety) Cyptococcus neoformans var. neoformans Bacteria Draft Assembly BI In Process
Sequencing the Human Microbiome Pilot Metagenomic Sequencing of Human Intestinal Microbiome   Bacteria Metagenomic sequencing WUGSC
BCM-HGSC
BI-MIT		 In Process
200 Mammals (Phase 1)* Screaming hairy armadillo Chaetophractus vellerosus Bacteria Draft Assembly BI
G10K Mammalian Community		 Completed
Sequencing the Human Microbiome Sequencing of Cultivable Microbes from Human Gut   Bacteria Draft reference genomes of 100 bacteria and archea strains from human gut WUGSC In Process
Sequencing the Human Microbiome Sequencing of Cultivable Microbes from Human Gut and Vagina   Bacteria Draft reference genomes of 200 bacteria and archea strains from human WUGSC
BCM-HGSC
BI-MIT		 In Process
Fungal Genome Initiative II   Agaricus bisporus Fungus Draft Assembly BI Completed
Origins of Multicellularity Project   Allomyces macrogynus Fungus Draft Assembly BI Completed
Fungal Genome Initiative I   Aspergillus nidulans Fungus Draft Assembly BI Completed
Fungal Genome Initiative II   Candida albicans Fungus Draft Assembly BI Completed
Fungal Genome Initiative III   Candida guilliermondii Fungus Draft Assembly BI Completed
Fungal Genome Initiative III   Candida lusitaniae Fungus Draft Assembly BI Completed
Fungal Genome Initiative II   Candida tropicalis Fungus Draft Assembly BI Completed
Fungal Genome Initiative III   Chaetomium globosum Fungus Draft Assembly BI Completed
Fungal Genome Initiative I   Coccidioides immitis Fungus Draft Assembly BI Completed
Fungal Genome Initiative I   Coprinus cinereus Fungus Draft Assembly BI Completed
Fungal Genome Initiative III   Cryptococcus neoformans, serotype B Fungus Draft Assembly BI Completed
Fungal Genome Initiative I   Cryptococcus neoformans, serotype A Fungus Draft Assembly BI Completed
Fungal Genome Initiative III   Histoplasma capsulatum Fungus Draft Assembly BI Completed
Fungal Genome Initiative II   Lodderomyces elongisporus Fungus Draft Assembly BI Completed
Dermatophyte fungi   Microsporum canis Fungus Draft Assembly BI Completed
Dermatophyte fungi   Microsporum gypseum Fungus Draft Assembly BI Completed
Origins of Multicellularity Project   Mortierella verticulata Fungus Low Coverage (~2X) BI In Process
Fungal Genome Initiative I   Pneumocystis carinii (human and mouse pathogens) Fungus Draft Assembly BI On Hold
Fungal Genome Initiative III   Podospora anserina Fungus Draft Assembly BI Completed
Fungal Genome Initiative I   Rhizopus oryzae Fungus Draft Assembly BI Completed
Fungal Genome Initiative II   Saccharomyces cerevisiae RM11-1A Fungus Draft Assembly BI Completed
Fungal Genome Initiative IV   Schizosaccharomyces japonicus Fungus Draft Assembly BI Completed
Fungal Genome Initiative IV   Schizosaccharomyces octosporus Fungus Draft Assembly BI Completed
Origins of Multicellularity Project   Spizellomyces punctatus Fungus Low Coverage (~2X) BI Completed
Dermatophyte fungi   Trichophyton equinum Fungus Draft Assembly BI Completed
Dermatophyte fungi   Trichophyton rubram Fungus Draft Assembly BI Completed
Dermatophyte fungi   Trichophyton tonsurans Fungus Draft Assembly BI Completed
Fungal Genome Initiative III   Uncinocarpus reesei Fungus Draft Assembly BI Completed
Fungal Genome Initiative I   Ustilago maydis Fungus Draft Assembly BI Completed
Black Yeasts* Black Yeast Capronia coronata / Exophiala Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Capronia epimyces Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Cladophialophora yegresii Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Coniosporium apollinis Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Coniosporium epidermidis Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Exophiala aquamarina Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Exophiala dermatitidis Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Exophiala spinifera Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Fonsecaea pedrosoi Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Ochroconis gallopava Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Phialophora europaea Fungus Draft Assembly BI Not Started
Black Yeasts* Black Yeast Rhinocladiella mackenziei Fungus Draft Assembly BI Not Started
Fungal Genome Initiative IV Chytrid Fungus Batrachochytrium dendrobatidis Fungus Draft Assembly BI Completed
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* Cyptococcus (multiple variety) Cyptococcus gatti Fungus Draft Assembly BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* Cyptococcus (multiple variety) Cyptococcus neoformans var. grubii Fungus Draft Assembly BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* Cyptococcus (multiple variety) Hybrids Fungus Draft Assembly BI In Process
Population genomic analysis of the human pathogenic fungus Cyptococcus neoformans* Cyptococcus (multiple variety) Other Tremellales species Fungus Draft Assembly BI In Process
Fungal Genome Initiative White-Nose Fungus Geomyces destructans Fungus Draft Assembly BI Completed
Multiple Strains of Yeast Yeast Saccharomyces cerevisiae Fungus 10 strains to full draft, 2-fold coverage up to 25 strains coverage WUGSC In Process
Yeast Yeast Saccharomyces kluyveri Fungus Draft Assembly WUGSC Completed
Origins of Multicellularity Project   Amastigomonas sp. Protist Draft Assembly BI Completed
Origins of Multicellularity Project   Amoebidium parasiticum Protist Low Coverage (~2X) BI In Process
Origins of Multicellularity Project   Capsaspora owczarzaki Protist Draft Assembly BI Completed
Origins of Multicellularity Project   Nuclearia simplex Protist Draft Assembly BI Cancelled, replaced by Ministeria vibrans
Origins of Multicellularity Project   Schaeroforma arctica Protist Draft Assembly BI In Process
Origins of Multicellularity Project   Stephanoeca or Acanthocoepis sp. Protist Low Coverage (~2X) BI Cancelled, replaced by Thecamonas trahens
Pathogenomics of Trypanosomatid parasites     Protist 10X coverage of 25 species/strains, finishing of 6, cDNAs for 8 WUGSC In Process
Comprehensive Sequencing Proposal for Plasmodium     Protist Draft sequence and ESTs of multiple isolates of P. falciparum, P. vivax, and related species for comparative and model system studies BI In Process
Comparative Analysis of Plasmodium Vivax     Protist 8X coverage of 6 species/strains; 40k ESTs BI In Process
Amoeba Amoeba Acanthamoeba castellanii Protist Draft Assembly BCM-HGSC In Process
Choanoflagellate Choanoflagellate Monosiga ovata Protist Draft Assembly WUGSC Not Started
Slime Mold Slime Mold Physarum polycephalum Protist Draft Assembly WUGSC In Process
Spirotrich Ciliate Spirotrich Ciliate Oxytricha trifallax [macronucleus] Protist Draft Assembly WUGSC In Process
Spirotrich Ciliate Spirotrich Ciliate Oxytricha trifallax [micronucleus + equivalent macronucleus sequences] Protist Draft Assembly   Not Started
Tetrahymena Tetrahymena Tetrahymena thermophila Protist Draft Assembly BI In Process
Origins of Multicellularity Project   Ministeria vibrans Protist Low Coverage (~2X) BI In Process
Origins of Multicellularity Project   Salpingoeca rosetta Protist Draft Assembly BI Completed
Origins of Multicellularity Project   Thecamonas trahens Protist Low Coverage (~2X) BI Completed
Nematode   Heterorhabditis bacteriophora Invertebrate Draft Assembly WUGSC Completed
Nematode   Pristionchus pacificus Invertebrate Draft Assembly WUGSC In Process
Trichinosis vector (human)   Trichinella spiralis Invertebrate Draft Assembly WUGSC Completed
Trichinosis vector (human)   Trichinella spiralis Invertebrate Genome refinement WUGSC In Process
Genome Analysis of Vectorial Capacity in Major Anopheles Vectors of Malaria Parasites     Invertebrate High quality assembly for 13 species; 200,000 EST of each species BI Not Started
Ecdysozoan Sequencing Amphipod Crustacean Jassa slatteryi Invertebrate Draft Assembly BI Not Started
Pea Aphid Aphid, Pea Acyrothosyphon pisum Invertebrate Draft Assembly BCM-HGSC Completed
Beetle, Red Flour Beetle, Red Flour Tribolium castaneum Invertebrate Draft Assembly BCM-HGSC Completed
Bug (Chagas' Vector) Bug (Chagas' Vector) Rhodnius prolixus Invertebrate Draft Assembly WUGSC Completed
Ecdysozoan Sequencing Centipede, Geophilimorph Strigamia maritima Invertebrate Draft Assembly BCM-HGSC In Process
Ecdysozoan Sequencing Chelicerate (Horseshoe Crab) Limulus polyphemus Invertebrate Draft Assembly WUGSC In Process
Drug Resistant Parasitic Nematode * Drug Resistant Parasitic Nematode Necator americanus Invertebrate Draft Assembly of Drug-Resistant Isolates WUGSC Not Started
Drug Resistant Parasitic Nematode * Drug Resistant Parasitic Nematode Telodorsagia circumcincta Invertebrate Draft Assembly of Drug-Resistant Isolates WUGSC Not Started
Freshwater Polyp Freshwater Polyp Hydra magnipapillata Invertebrate Draft Assembly JCVI In Process
Fruit Fly Fruit Fly Drosophila ananassae Invertebrate Draft Assembly Agencourt Completed
modENCODE Comparative Genomics Fruit Fly Drosophila biarmipes Invertebrate Draft Assembly BCM-HGSC Not Started
modENCODE Comparative Genomics Fruit Fly Drosophila bipectinata Invertebrate Draft Assembly BCM-HGSC Not Started
modENCODE Comparative Genomics Fruit Fly Drosophila elegans Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila erecta Invertebrate Draft Assembly Agencourt Completed
modENCODE Comparative Genomics Fruit Fly Drosophila eugracilis Invertebrate Draft Assembly BCM-HGSC Not Started
modENCODE Comparative Genomics Fruit Fly Drosophila ficusphila Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila grimshawi Invertebrate Draft Assembly Agencourt Completed
modENCODE Comparative Genomics Fruit Fly Drosophila kikkawai Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila mauritiana Invertebrate Feasibility sequencing** WUGSC Completed
modENCODE Comparative Genomics Fruit Fly Drosophila melanogaster, OregonR Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila melanogaster Invertebrate Draft Assembly BDGP
BCM-HGSC		 Completed
Drosophila Genetic Reference Panel (Revised) Fruit Fly Drosophila melanogaster Invertebrate 10-12 X 454 coverage and 6 x Solexa coverage of 192 lines BCM-HGSC In Process
Fruit Fly Fruit Fly Drosophila mojavensis Invertebrate Draft Assembly Agencourt Completed
Fruit Fly Fruit Fly Drosophila persimilis Invertebrate Draft Assembly BI Completed
Fruit Fly Fruit Fly Drosophila pseudoobscura Invertebrate Draft Assembly BCM-HGSC Completed
modENCODE Comparative Genomics Fruit Fly Drosophila rhopaloa Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila sechellia Invertebrate Draft Assembly BI Completed
Fruit Fly Fruit Fly Drosophila simulans Invertebrate Draft Assembly WUGSC Completed
modENCODE Comparative Genomics Fruit Fly Drosophila takahashii Invertebrate Draft Assembly BCM-HGSC Not Started
Fruit Fly Fruit Fly Drosophila virilis Invertebrate Draft Assembly Agencourt Completed
Fruit Fly Fruit Fly Drosophila willistoni Invertebrate Draft Assembly JCVI Completed
Fruit Fly Fruit Fly Drosophila yakuba Invertebrate Draft Assembly WUGSC Completed
Honey Bee Honey Bee Apis mellifera Invertebrate Genome refinement BCM-HGSC Completed
Honey Bee Honey Bee Apis mellifera Invertebrate Draft Assembly BCM-HGSC In Process
Louse, Body Louse, Body Pediculus humanus Invertebrate Draft Assembly JCVI Completed
Mosquito Mosquito Anopheles gambiae, M strain Invertebrate Draft Assembly WUGSC Completed
Mosquito Mosquito Anopheles gambiae, S strain Invertebrate Draft Assembly JCVI In Process
Trichoplax Placazoan Trichoplax adhaerens Invertebrate Draft Assembly WUGSC Sequenced by DOE
Planarian Planarian Schmidtea mediterranea Invertebrate Draft Assembly WUGSC Completed
Roundworm Roundworm Caenorhabditis brenneri Invertebrate Genome Refinement WUGSC In Process
Roundworm Roundworm Caenorhabditis brenneri Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis briggsae Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis elegans Invertebrate Finished Sequence WUGSC
SI		 Completed
Roundworm Roundworm Caenorhabditis japonica Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis remanei Invertebrate Draft Assembly WUGSC In Process
Roundworm Roundworm Caenorhabditis remanei Invertebrate Genome refinement WUGSC Completed
modENCODE Comparative Genomics Roundworm Caenorhabditis sp.11 (JU1373) Invertebrate Draft Assembly WUGSC In Process
modENCODE Comparative Genomics Roundworm Caenorhabditis sp.7 (JU1199) Invertebrate Draft Assembly WUGSC In Process
modENCODE Comparative Genomics Roundworm Caenorhabditis sp.9 (JU1325) Invertebrate Draft Assembly WUGSC In Process
Sand Flies Sand Fly Lutzomiya longipalpis Invertebrate BAC library construction; BAC-end sequencing WUGSC
BCM-HGSC		 In Process
Sand Flies Sand Fly Phlebotomus papatasi Invertebrate BAC library construction; BAC-end sequencing WUGSC
BCM-HGSC		 In Process
Sea Slug Sea Slug Aplysia californica Invertebrate Draft Assembly BI In Process
Sea Squirt Sea Squirt Ciona savignyi Invertebrate Draft Assembly BI Completed
Echinoderm Sequencing for Genome Regulatory Network Analysis Sea Star Asterina miniata Invertebrate Draft Assembly BCM-HGSC In Process
Echinoderm Sequencing for Genome Regulatory Network Analysis Sea Urchin Lytechinus variegtus Invertebrate Draft Assembly BCM-HGSC In Process
Sea Urchin Sea Urchin Strongylocentrotus purpuratus Invertebrate Draft Assembly BCM-HGSC Completed
Snail, Freshwater Snail, Freshwater Biomphalaria glabrata (schistosomiasis vector) Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Ancylostoma caninum Invertebrate Draft Assembly WUGSC Completed
Strongylid Nematode Strongylid Nematode Cooperia oncophora Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Dictyocaulus viviparus Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Necator americanus Invertebrate Draft Assembly WUGSC Completed
Strongylid Nematode Strongylid Nematode Nematodirus battus Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Nippostrongylus brasiliensis Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Oesophagostomum dentatum Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Ostertagia ostertagii Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Teladorsagia circumcincta Invertebrate Draft Assembly WUGSC In Process
Strongylid Nematode Strongylid Nematode Trichostrongylus vitrinus Invertebrate Draft Assembly WUGSC In Process
Ecdysozoan Sequencing Tardigrade Hypsibius dujardini Invertebrate Draft Assembly BI Not Started
Wasp, Parasitoid Wasp, Parasitoid Nasonia giraulti Invertebrate Draft Assembly BCM-HGSC Completed
Wasp, Parasitoid Wasp, Parasitoid Nasonia longicornis Invertebrate Draft Assembly BCM-HGSC Completed
Wasp, Parasitoid Wasp, Parasitoid Nasonia vitripennis Invertebrate Draft Assembly BCM-HGSC Completed
Worm, Acorn Worm, Acorn Saccoglossus kowalesvskii Invertebrate Draft Assembly BCM-HGSC In Process
Ecdysozoan Sequencing Worm, Priapulid Priapulus caudatus Invertebrate Draft Assembly WUGSC In Process
Genome Analysis of Major Tick and Mite Vectors of Human Pathogens     Invertebrate Draft genome assembly (high coverage) of 2 Acaries and transcriptome sequencing of 8 Acaries NIAID Not Started
Glossina (Tsetse Fly) Genome Projects     Invertebrate Draft genome assembly and transcriptome sequencing of five Glossina genomes and two comparative genomes; low coverage genome sequencing of ~12 field populations. BI Not Started
Food-Borne Tremadiases     Invertebrate Draft genome assembly (high coverage) and transcriptome sequencing of 14 FBT genomes that infect various body sites WUGSC Not Started
Tilapia Cichlid   Astatotilapia burtoni Non-mammalian Vertebrate Low Coverage BI In Process
Tilapia Cichlid   Metriaclima zebra Non-mammalian Vertebrate Low Coverage BI In Process
Tilapia Cichlid   Oreochromis niloticus Non-mammalian Vertebrate Draft Assembly BI In Process
Tilapia Cichlid   Paralibidichromis chilotes Non-mammalian Vertebrate Low Coverage BI In Process
Chicken Chicken Gallus gallus Non-mammalian Vertebrate Draft Assembly WUGSC Completed
Chicken Chicken Gallus gallus Non-mammalian Vertebrate Genome refinement WUGSC In Process
Evolution of the Proteome Coelacanth Latimeria chalumnae Non-mammalian Vertebrate Draft Assembly BI In Process
Evolution of the Proteome Gar, Spotted Lepisosteus oculatus Non-mammalian Vertebrate Draft Assembly BI In Process
Evolution of the Proteome Hagfish Eptatretus burgeri Non-mammalian Vertebrate Draft Assembly   Not Started
Lamprey, Sea Lamprey, Sea Petromyzon marinus Non-mammalian Vertebrate Draft Assembly WUGSC In Process
Lizard, Anole Lizard, Anole Anolis carolinensis Non-mammalian Vertebrate Full draft genome BI Completed
Pufferfish Pufferfish Tetraodon nigroviridis Non-mammalian Vertebrate Draft Assembly BI Completed
Elephant Shark Shark, Elephant Callorhinchus milii Non-mammalian Vertebrate Draft Assembly WUGSC In Process
Evolution of the Proteome Skate Raja erinacea Non-mammalian Vertebrate Draft Assembly   Not Started
Coelacanth/Lungfish RNA-Seq Project* Slender Lungfish or Spotted African Lungfish Protopterus dolloi Non-mammalian Vertebrate RNA sequencing of 3 lungfish tissues - brain, testis, mixed organ (RNAseq libraries at 5Gb each) - to complement 1 tissue from coelacanth BI In Process
Stickleback, Threespine Stickleback, Threespine Gasterosteus aculeatus Non-mammalian Vertebrate Draft Assembly BI In Process
Evolution of the Proteome Turtle, Painted Chrysemys picta Non-mammalian Vertebrate Draft Assembly WUGSC In Process
Zebra finch Zebra finch Taeniopygia guttata Non-mammalian Vertebrate Draft Assembly WUGSC Completed
Zebra finch Zebra finch Taeniopygia guttata Non-mammalian Vertebrate Physical map WUGSC Completed
200 Mammals (Phase 1)* Aardvark Orycteropus afer Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Top-up of Remaining 2X Mammals Alpaca Vicugna pacos Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Alpaca Vicugna pacos Mammal Low Coverage (~2X) WUGSC Completed
Multiple Mammalian Genomes for Comparative Annotation Armadillo, Nine-Banded Dasypus novemcinctus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Armadillo, Nine-Banded Dasypus novemcinctus Mammal Draft Assembly BCM-HGSC In Process
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Armadillo, Nine-banded Dasypus novemcinctus Mammal Transcriptome BI In Process
Additional Primate Sequencing Baboon Papio hamadryas Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Bat, Little Brown (Microbat) Myotis lucifugus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Bat, Little Brown (Microbat) Myotis lucifugus Mammal Draft Assembly BI In Process
200 Mammals (Phase 1)* Big brown bat Eptesicus fuscus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Expanding Comparative Genomics in Nonhuman Primates* Black and white colobus Colobus sp. Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community		 In Process
Bonobo Bonobo Pan paniscus Mammal Fosmid-end Sequencing WUGSC In Process
Expanding Comparative Genomics in Nonhuman Primates* Buff-headed capuchin Cebus xanthrosternos Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community		 In Process
Additional Primate Sequencing Bushbaby Otolemur garnetti Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Bushbaby Otolemur garnetti Mammal Low Coverage (~2X) BI Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq Bushbaby/Galago Otolemur garnetti Mammal Transcriptome BI In Process
200 Mammals (Phase 1)* California leaf-nosed bat Macrotus californicus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* Cape golden mole Chrysochloris asiatica Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Multiple Mammalian Genomes for Comparative Annotation Cat Felis catus Mammal Draft Assembly WUGSC In Process
Cat Cat Felis catus Mammal Low Coverage (~2X) Agencourt Completed
Chimpanzee Chimpanzee Pan troglodytes Mammal Draft Assembly WUGSC
BI		 Completed
Chimpanzee Chimpanzee Pan troglodytes Mammal Genome refinement WUGSC In Process
200 Mammals (Phase 1)* Chinchilla Chinchilla laniger Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* Chinese hamster Cricetulus griseus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Cow Cow Bos taurus Mammal Draft Assembly BCM-HGSC Completed
Multiple Mammalian Y Chromosomes Cow Bos taurus Mammal Genome refinement BCM-HGSC
WUGSC		 In Process
200 Mammals (Phase 1)* Crested porcupine Hystrix cristata Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* Degu Octodon degus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Dog Dog Canis familiaris Mammal Draft Assembly BI Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Dog Canis familiaris Mammal Transcriptome BI In Process
Dog Dog Canis familiaris Mammal Genome refinement BI In Process
Top-up of Remaining 2X Mammals Dolphin Tursiops truncates Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Dolphin Tursiops truncates Mammal Low Coverage (~2X) BCM-HGSC Completed
Expanding Comparative Genomics in Nonhuman Primates* Drill Mandrillus leucophaeus Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community		 In Process
200 Mammals (Phase 1)* Eastern grey kangaroo Macropus giganteus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Elephant, African Savannah Loxodonta africana africana Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Elephant, African Savannah Loxodonta africana africana Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Elephant, African Savannah Loxodonta africana Mammal Low Coverage (~2X) BI Completed
Ferret Ferret Mustela putorius furo Mammal Draft Genome BI In Process
Top-up of Remaining 2X Mammals Fly Fox (Megabat) Pteropus vampyrus Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Flying Fox (Megabat) Pteropus vampyrus Mammal Low Coverage (~2X) BCM-HGSC Completed
Expanding Comparative Genomics in Nonhuman Primates* Gelada monkey Theropithecus gelada Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community		 In Process
200 Mammals (Phase 1)* Giant anteater Myrmecophaga tridactyla Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Gibbon Gibbon Nomascus leucogenys Mammal BAC-end sequencing WUGSC In Process
Gibbon Gibbon Nomascus leucogenys Mammal Draft Assembly BCM-HGSC
WUGSC		 In Process
Additional Primate Sequencing Gibbon Nomascus lucogenys Mammal Targeted BAC finishing BCM-HGSC
WUGSC		 In Process
200 Mammals (Phase 1)* Golden-mantled howling monkey Alouatta palliata Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* Greater horseshoe bat Rhinolophus ferrumequinum Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Multiple Mammalian Genomes for Comparative Annotation Guinea Pig Cavia porcellus Mammal Low Coverage (~2X) BI Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Guinea Pig Cavia porcellus Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Guinea Pig Cavia porcellus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Hedgehog, European Erinaceus europaeus Mammal Low Coverage (~2X) BI Completed
Top-up of Remaining 2X Mammals Hedgehog, European Erinaceus europeaus Mammal Draft Assembly BI In Process
200 Mammals (Phase 1)* Hippopottamus Hippopotamus amphibius Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* Honey Possum (Noolbenger) Tarsipes rostratus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Multiple Mammalian Genomes for Comparative Annotation Horse Equus caballus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Horse Equus caballus Mammal Draft Assembly BI Completed
Allelic Spectrum of Common Disease Human Homo sapiens Mammal See Hyperlink See Hyperlink  
X-linked disorders Human Homo sapiens Mammal See Hyperlink   See Hyperlink
Human Structural Variation Human Homo sapiens Mammal Structural Variation BI
BCM-HGSC
WUGSC
Agencourt
JCVI		 See Hyperlink
Human Human Homo sapiens Mammal Finished Sequence Consortium Completed
Uncloned, mapped autosomal Mendelian diseases Human Homo sapiens Mammal See Hyperlink   See Hyperlink
Multiple Mammalian Genomes for Comparative Annotation Hyrax Procavia capensis Mammal Low Coverage (~2X) BCM-HGSC Completed
Top-up of Remaining 2X Mammals Hyrax Procavia capensis Mammal Draft Assembly BCM-HGSC In Process
200 Mammals (Phase 1)* Koala Phascolarctos cinereus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Top-up of Remaining 2X Mammals Lemur, Flying Dermoptera sp. Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Lemur, Flying Dermoptera sp. Mammal Low Coverage (~2X) WUGSC ON HOLD
Additional Primate Sequencing Lemur, Mouse Microcebus murinus Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Lemur, Mouse Microcebus murinus Mammal Low Coverage (~2X) BI Completed
200 Mammals (Phase 1)* Lesser Egyptian jerboa Jaculus jaculus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Lizard, Anole Anolis carolinensis Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Llama Llama sp. Mammal Low Coverage (~2X) WUGSC Cancelled due to unavailability of material
200 Mammals (Phase 1)* Long-haired (Rufous) elephant shrew Elephantulus rufescens Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Additional Primate Sequencing Macaque, Cynomolgous Macaca fascicularis Mammal Draft Assembly WUGSC In Process
Genome and other Sequence Information from Primate Models of HIV Infection Macaque, Pigtail Macaca nemestrina Mammal Draft Assembly with local refinement and variation data; basic RNA sequencing   Not Started
Macaque, Rhesus Macaque, Rhesus Macaca mulatta Mammal Targeted BAC finishing BCM-HGSC
WUGSC		 In Process
Macaque, Rhesus Macaque, Rhesus Macaca mulatta Mammal Draft Assembly BCM-HGSC
JCVI
WUGSC		 Completed
Multiple Mammalian Y Chromosomes Macaque, Rhesus Macaca mulatta Mammal Genome refinement BCM-HGSC
WUGSC		 In Process
Genome and other Sequence Information from Primate Models of HIV Infection Macaque, Rhesus (Chinese population) Macaca mulatta Mammal Draft Assembly   Not Started
200 Mammals (Phase 1)* Malayan tapir Tapirus indicus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Sooty Mangabey* Mangabey, Sooty Cercocebus atys Mammal Draft Assembly BCM-HGSC Not Started
Multiple Mammalian Y Chromosomes Marmoset Callithrix jacchus Mammal Genome refinement BCM-HGSC
WUGSC		 In Process
Additional Primate Sequencing Marmoset Callithrix jacchus Mammal Targeted BAC finishing WUGSC
BCM-HGSC		 In Process
Marmoset Marmoset Callithrix jacchus Mammal Draft Assembly WUGSC
BCM-HGSC		 In Process
200 Mammals (Phase 1)* Mexican free-tailed bat Tadarida brasiliensis Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Multiple Mammalian Genomes for Comparative Annotation Mole Cryptomys sp. Mammal Low Coverage (~2X) BI On Hold
Additional Primate Sequencing Monkey, Squirrel Saimiri sp. Mammal Draft Assembly BI In Process
Mouse Resequencing Mouse Mus musculus Mammal 5 Mb targeted sequencing per line, eventually several hundred lines BI In Process
Mouse Mouse Mus musculus Mammal Finished Sequence BI
WUGSC
SI
BCM-HGSC		 Completed
Peromyscus Mouse, Deer Peromyscus californicus Mammal Low Coverage (~2X) BCM-HGSC In Process
Peromyscus Mouse, Deer Peromyscus maniculatus Mammal Draft Sequence BCM-HGSC In Process
Peromyscus Mouse, Deer Peromyscus polionotus Mammal Low Coverage (~2X) BCM-HGSC In Process
Peromyscus Mouse, White-Footed Peromyscus leucopus Mammal Low Coverage (~2X) BCM-HGSC In Process
200 Mammals (Phase 1)* Naked mole rat Heterocephalus glaber Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* North American porcupine Erethizon dorsatum Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Opossum, Gray Short-Tailed Monodelphis domestica Mammal Transcriptome BI In Process
Opossum, Laboratory Opossum, Laboratory Monodelphis domestica Mammal Draft Assembly BI Completed
Multiple Mammalian Y Chromosomes Opossum, Laboratory Monodelphis domestica Mammal Genome refinement BCM-HGSC
WUGSC		 In Process
Additional Primate Sequencing Orangutan Pongo pygmaeus Mammal Draft Assembly BCM-HGSC
WUGSC		 Completed
Additional Primate Sequencing Orangutan Pongo pygmaeus Mammal Targeted BAC finishing BCM-HGSC
WUGSC		 In Process
Top-up of Remaining 2X Mammals Pangolin Manis pentadactyla Mammal Draft Assembly BCM-HGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Pangolin Manis sp. Mammal Low Coverage (~2X) WUGSC Completed
Expanding Comparative Genomics in Nonhuman Primates* Patas monkey Erythropcebus patas Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community		 In Process
Top-up of Remaining 2X Mammals Pika Ochotona princeps Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Pika Ochotona sp. Mammal Low Coverage (~2X) BI Completed
Platypus, Duck-Billed Platypus, Duck-Billed Ornithorhynchus anatinus Mammal Draft Assembly WUGSC Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Rabbit Oryctolagus cuniculus Mammal Transcriptome BI In Process
Multiple Mammalian Genomes for Comparative Annotation Rabbit Oryctolagus cuniculus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Rabbit Oryctolagus cuniculus Mammal Low Coverage (~2X) BI Completed
Rat Rat Rattus norvegicus Mammal Finished Sequence BCM-HGSC Completed
Multiple Mammalian Y Chromosomes Rat Rattus norvegicus Mammal Genome refinement BCM-HGSC
WUGSC		 In Process
Rat Rat Rattus norvegicus Mammal Genome refinement BCM-HGSC In Process
Rat SNPs Rat SNPs Rattus norvegicus Mammal SNP discovery BCM-HGSC Completed
Top-up of Remaining 2X Mammals Rat, Kangaroo Dipodomys sp. Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Rat, Kangaroo Dipodomys sp. Mammal Low Coverage (~2X) BCM-HGSC Completed
Genome and other Sequence Information from Primate Models of HIV Infection Rhesus Macaque Macaca mulatta Mammal RNA expression resource   Not Started
200 Mammals (Phase 1)* Ring-tailed lemur Lemur catta Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Multiple Mammalian Genomes for Comparative Annotation Shrew, Elephant Elephantulus sp. Mammal Low Coverage (~2X) BI On Hold
Top-up of Remaining 2X Mammals Shrew, European Common Sorex araneus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Shrew, European Common Sorex araneus Mammal Low Coverage (~2X) BI Completed
Multiple Mammalian Genomes for Comparative Annotation Shrew, Tree Tupaia belangeri Mammal Draft Assembly WUGSC In Process
Multiple Mammalian Genomes for Comparative Annotation Shrew, Tree Tupaia belangeri Mammal Low Coverage (~2X) BI Completed
Expanding Comparative Genomics in Nonhuman Primates* Sifaka Propithecus verreauxi Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community		 In Process
Multiple Mammalian Genomes for Comparative Annotation Sloth Choloepus hoffmanni Mammal Low Coverage (~2X) WUGSC Completed
Top-up of Remaining 2X Mammals Sloth Choloepus hoffmanni Mammal Draft Assembly WUGSC In Process
200 Mammals (Phase 1)* Springhare Pedetes capensis Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Top-up of Remaining 2X Mammals Squirrel Spermophilis tridecemlineatus Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Squirrel Spermophilis tridecemlineatus Mammal Low Coverage (~2X) BI Completed
200 Mammals (Phase 1)* Star nosed mole Condylura cristata Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Defining the Transcriptome of Nine Vertebrate Genomes Using RNA-Seq* Stickleback, Threespine Gasterosteus aculeatus Mammal Transcriptome BI In Process
200 Mammals (Phase 1)* Syrian/Golden Hamster Mesocricetus auratus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Multiple Mammalian Genomes for Comparative Annotation Tarsier Tarsier syrichta Mammal Low Coverage (~2X) WUGSC Completed
Additional Primate Sequencing Tarsier Tarsier syrichta Mammal Draft Assembly WUGSC In Process
Top-up of Remaining 2X Mammals Tenrec (Lesser Hedgehog) Echinops telfairi Mammal Draft Assembly BI In Process
Multiple Mammalian Genomes for Comparative Annotation Tenrec (Lesser Hedgehog) Echinops telfairi Mammal Low Coverage (~2X) BI Completed
Vervet Vervet Chlorocebus aethiops Mammal Draft sequence; SNP resource WUGSC In Process
Prairie Vole Vole, Prairie Microtus ochrogaster Mammal Draft assembly, SNP resource, and low-coverage of related species BI In Process
Wallaby, Tammar Wallaby, Tammar Macropus eugenii Mammal Low Coverage (~2X) BCM-HGSC
AGRF		 In Process
200 Mammals (Phase 1)* Water Chevrotain Hyemoschus aquaticus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* Weddell Seal Leptonychotes weddellii Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* West Indian manatee Trichechus manatus Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
200 Mammals (Phase 1)* White rhinocerous Ceratotherium simum Mammal Draft Assembly BI
G10K Mammalian Community		 Completed
Expanding Comparative Genomics in Nonhuman Primates* White-fronted capuchin Cebus albifrons Mammal Draft Assembly BCM-HGSC
G10K Mammalian Community		 In Process

Last updated: March 26, 2014